Nicholas J. Horton, Ken Kleinman Using R for Data Management, Statistical Analysis, and Graphics      2010
http://www.amazon.com/Using-Management-Statistical-Analysis-Graphics/dp/1439827559
John Maindonald, W. John Braun Data analysis and graphics using R An example-based approach  2010
http://www.amazon.com/Data-Analysis-Graphics-Using-Example-Based/dp/0521762936