As I understand what you said
>>Each eye was examined several times, from 3 to 8 times (Visits). ... And the interval between these visits is variable. I was planning to include this information (Time) as a covariate on each measure level. ... Shall I just add it as a random effect, for each eye, with an AR1 Covtype? Something like: /RANDOM TIME | SUBJECT(EYE*PATIENT) COVTYPE(AR1)
You are going to have trouble because you are treating visits as a repeated factor while it is repeated, persons have a different number of visits. Thus missing data problems.
I think a better way to do this would be to use a three level model of visit within in eye within person. Basically a growth curve model for each eye with the interval beween visits being used to construct the scaling of the time coefficients. The slight familiarity I have with such models is wholely in the context of Mplus. I think example 6 in the Mixed documetation will bring you pretty close. Among others Judith Singer and John Willet's recent book might be quite useful. All that said, I defer in my recommendations to
persons on the list more experienced with mixed.