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datalist is an R package to 1) convert data sets into numeric data lists for import into JAGS, WinBUGS and OpenBUGS and 2) generate data.frames that can be passed to models for the purposes of predicting the effects of particular variables with the other variables held constant.
| Version: | 0.2 |
| Depends: | R (≥ 3.0.2) |
| Imports: | assertthat |
| Suggests: | testthat |
| Published: | 2014-01-03 |
| Author: | Joe Thorley [aut, cre] |
| Maintainer: | Joe Thorley <joe at poissonconsulting.ca> |
| License: | GPL-2 |
| URL: | https://github.com/joethorley/datalist |
| NeedsCompilation: | no |
| Citation: | datalist citation info |
| Materials: | README NEWS |
| CRAN checks: | datalist results |
| Reference manual: | datalist.pdf |
| Package source: | datalist_0.2.tar.gz |
| Windows binaries: | r-devel: datalist_0.2.zip, r-release: datalist_0.2.zip, r-oldrel: datalist_0.2.zip |
| OS X Snow Leopard binaries: | r-release: datalist_0.2.tgz, r-oldrel: datalist_0.2.tgz |
| OS X Mavericks binaries: | r-release: datalist_0.2.tgz |
Write bugs model files for hierarchical and spatial models, arranges unbalanced data in ragged arrays, and creates starting values.
| Version: | 2.3 |
| Depends: | R (≥ 3.0.0) |
| Imports: | MASS, abind |
| Suggests: | spdep |
| Enhances: | R2WinBUGS, R2OpenBUGS, BRugs, R2jags, sp, nlme |
| Published: | 2014-01-02 |
| Author: | Patrick Brown |
| Maintainer: | Patrick Brown <patrick.brown at utoronto.ca> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| In views: | Bayesian, Spatial |
| CRAN checks: | glmmBUGS results |
| Reference manual: | glmmBUGS.pdf |
| Package source: | glmmBUGS_2.3.tar.gz |
| Windows binaries: | r-devel: glmmBUGS_2.3.zip, r-release: glmmBUGS_2.3.zip, r-oldrel: glmmBUGS_2.3.zip |
| OS X Snow Leopard binaries: | r-release: glmmBUGS_2.3.tgz, r-oldrel: glmmBUGS_2.3.tgz |
| OS X Mavericks binaries: | r-release: glmmBUGS_2.3.tgz |
| Old sources: | glmmBUGS archive |
This package has provided an interface to WinBUGS/OpenBUGS/JAGS via R2WinBUGS and R2jags. Some options will be intelligently guessed, e.g. the path to WinBUGS/OpenBUGS/JAGS and the data/parameter list. Users can specify all the options in a GUI.
| Version: | 0.1.4 |
| Depends: | R2WinBUGS, gWidgetsRGtk2 |
| Suggests: | R2jags, knitr |
| Published: | 2013-12-10 |
| Author: | Yihui Xie and Jiebiao Wang |
| Maintainer: | Jiebiao Wang <randel.wang at gmail.com> |
| License: | GPL-2 | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | iBUGS results |
| Reference manual: | iBUGS.pdf |
| Vignettes: | An Introduction to iBUGS |
| Package source: | iBUGS_0.1.4.tar.gz |
| Windows binaries: | r-devel: iBUGS_0.1.4.zip, r-release: iBUGS_0.1.4.zip, r-oldrel: iBUGS_0.1.4.zip |
| OS X Snow Leopard binaries: | r-release: iBUGS_0.1.4.tgz, r-oldrel: iBUGS_0.1.4.tgz |
| OS X Mavericks binaries: | r-release: not available |
| Old sources: | iBUGS archive |
Using this package, it is possible to call a BUGS model, summarize inferences and convergence in a table and graph, and save the simulations in arrays for easy access in R / S-PLUS. In S-PLUS, the openbugs functionality and the windows emulation functionality is not yet available.
| Version: | 2.1-19 |
| Depends: | R (≥ 2.13.0), coda (≥ 0.11-0), boot |
| Suggests: | BRugs (≥ 0.3-2) |
| Published: | 2013-04-07 |
| Author: | originally written by Andrew Gelman; changes and packaged by Sibylle Sturtz and Uwe Ligges. With considerable contributions by Gregor Gorjanc and Jouni Kerman. Ported to S-PLUS by Insightful Corp. |
| Maintainer: | Uwe Ligges <ligges at statistik.tu-dortmund.de> |
| License: | GPL-2 |
| URL: | http://www.stat.columbia.edu/~gelman/bugsR/ |
| NeedsCompilation: | no |
| SystemRequirements: | WinBUGS 1.4 |
| Citation: | R2WinBUGS citation info |
| Materials: | NEWS |
| In views: | Bayesian, gR |
| CRAN checks: | R2WinBUGS results |
| Reference manual: | R2WinBUGS.pdf |
| Package source: | R2WinBUGS_2.1-19.tar.gz |
| Windows binaries: | r-devel: R2WinBUGS_2.1-19.zip, r-release: R2WinBUGS_2.1-19.zip, r-oldrel: R2WinBUGS_2.1-19.zip |
| OS X Snow Leopard binaries: | r-release: R2WinBUGS_2.1-19.tgz, r-oldrel: R2WinBUGS_2.1-19.tgz |
| OS X Mavericks binaries: | r-release: R2WinBUGS_2.1-19.tgz |
| Old sources: | R2WinBUGS archive |
| Reverse depends: | bisoreg, iBUGS |
| Reverse imports: | mi, R2jags, spikeSlabGAM |
| Reverse suggests: | AICcmodavg, arm, bcrm, classify, dclone, emdbook, gemtc, mcmcplots, MethComp, mixstock |
| Reverse enhances: | glmmBUGS |
Fully-interactive R interface to the OpenBUGS software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on Linux and on 64-bit R under Windows are in "beta" status and less efficient.
| Version: | 0.8-3 |
| Depends: | R (≥ 2.11.0) |
| Imports: | utils, coda |
| Published: | 2013-08-19 |
| Author: | OpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson. |
| Maintainer: | Uwe Ligges <ligges at statistik.tu-dortmund.de> |
| License: | GPL-2 |
| URL: | http://www.openbugs.info/ |
| NeedsCompilation: | yes |
| SystemRequirements: | OpenBUGS (>= 3.2.2), hence Windows or Linux |
| Citation: | BRugs citation info |
| Materials: | NEWS |
| In views: | gR |
| CRAN checks: | BRugs results |
| Reference manual: | BRugs.pdf |
| Package source: | BRugs_0.8-3.tar.gz |
| Windows binaries: | r-devel: BRugs_0.8-3.zip, r-release: BRugs_0.8-3.zip, r-oldrel: BRugs_0.8-3.zip |
| OS X Snow Leopard binaries: | r-release: not available, r-oldrel: not available |
| OS X Mavericks binaries: | r-release: not available |
| Old sources: | BRugs archive |
| Reverse suggests: | bcrm, dclone, gemtc, MethComp, R2WinBUGS |
| Reverse enhances: | glmmBUGS |
Using this package, it is possible to call a BUGS model, summarize inferences and convergence in a table and graph, and save the simulations in arrays for easy access in R.
| Version: | 3.2-2.2 |
| Depends: | R (≥ 2.13.0) |
| Imports: | coda (≥ 0.11-0), boot |
| Published: | 2013-04-10 |
| Author: | originally written as R2WinBUGS by Andrew Gelman; changes and packaged by Sibylle Sturtz and Uwe Ligges. With considerable contributions by Gregor Gorjanc and Jouni Kerman. Adapted to R2OpenBUGS from R2WinBUGS by Neal Thomas. |
| Maintainer: | Neal Thomas <snthomas99 at yahoo.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| SystemRequirements: | OpenBUGS (>= 3.2.2) |
| Citation: | R2OpenBUGS citation info |
| Materials: | NEWS |
| In views: | gR |
| CRAN checks: | R2OpenBUGS results |
| Reference manual: | R2OpenBUGS.pdf |
| Vignettes: | R2OpenBUGS |
| Package source: | R2OpenBUGS_3.2-2.2.tar.gz |
| Windows binaries: | r-devel: R2OpenBUGS_3.2-2.2.zip, r-release: R2OpenBUGS_3.2-2.2.zip, r-oldrel: R2OpenBUGS_3.2-2.2.zip |
| OS X Snow Leopard binaries: | r-release: R2OpenBUGS_3.2-2.2.tgz, r-oldrel: not available |
| OS X Mavericks binaries: | r-release: R2OpenBUGS_3.2-2.2.tgz |
| Old sources: | R2OpenBUGS archive |
| Reverse suggests: | AICcmodavg, dclone, tsbugs |
| Reverse enhances: | glmmBUGS |
Functions to prepare files needed for running BUGS in batch-mode, and running BUGS from R. Support for Linux and Windows systems with OpenBugs is emphasized.
| Version: | 0.5-9 |
| Suggests: | coda (≥ 0.13-5) |
| Published: | 2013-04-09 |
| Author: | Jun Yan and Marcos Prates |
| Maintainer: | Marcos Prates <marcosop at est.ufmg.br> |
| License: | GPL (≥ 3.0) |
| NeedsCompilation: | no |
| Materials: | ChangeLog |
| In views: | Bayesian, gR |
| CRAN checks: | rbugs results |
| Reference manual: | rbugs.pdf |
| Package source: | rbugs_0.5-9.tar.gz |
| Windows binaries: | r-devel: rbugs_0.5-9.zip, r-release: rbugs_0.5-9.zip, r-oldrel: rbugs_0.5-9.zip |
| OS X Snow Leopard binaries: | r-release: rbugs_0.5-9.tgz, r-oldrel: rbugs_0.5-9.tgz |
| OS X Mavericks binaries: | r-release: rbugs_0.5-9.tgz |
| Old sources: | rbugs archive |
| Reverse depends: | R2MLwiN |
This package provides high-level interface utilities for Just Another Gibbs Sampler (JAGS). The primary functions facilitate running parallel JAGS models for multiple chains, automated control of convergence and sample length diagnostics, evaluation of the performance of a model against simulated data, and compatibility with the WinBUGS syntax of model files with data and initial values lists. Model fitting can be done locally (via the rjags package or separate JAGS instances) or via distributed computing clusters such as those provided by snow (a Simple Network Of Workstations), Xgrid, or other user specified functions. A JAGS extension module implementing additional distributions for JAGS models (including the Pareto family of distributions) is also provided.
| Version: | 1.2.1-0 |
| Depends: | R (≥ 2.14) |
| Imports: | parallel, lattice (≥ 0.20-10), coda (≥ 0.16-1), stats, utils |
| Suggests: | rjags |
| Published: | 2014-06-21 |
| Author: | Matthew Denwood |
| Maintainer: | Matthew Denwood <md at sund.ku.dk> |
| License: | GPL-2 |
| Copyright: | The code in src/distributions/jags/ (and elements elsewhere where indicated) is Copyright (C) 2002-10 Martyn Plummer, licensed under GPL-2. All other code is Copyright (C) Matthew Denwood, licensed under GPL-2. |
| URL: | http://cran.r-project.org/web/packages/runjags/ |
| NeedsCompilation: | yes |
| SystemRequirements: | jags (see http://mcmc-jags.sourceforge.net) |
| Citation: | runjags citation info |
| Materials: | README ChangeLog |
| In views: | Bayesian |
| CRAN checks: | runjags results |
| Reference manual: | runjags.pdf |
| Vignettes: | Using the runjags package |
| Package source: | runjags_1.2.1-0.tar.gz |
| Windows binaries: | r-devel: runjags_1.2.1-0.zip, r-release: runjags_1.2.1-0.zip, r-oldrel: runjags_1.2.1-0.zip |
| OS X Snow Leopard binaries: | r-release: runjags_1.2.1-0.tgz, r-oldrel: runjags_1.2.1-0.tgz |
| OS X Mavericks binaries: | r-release: runjags_1.2.1-0.tgz |
| Old sources: | runjags archive |
| Reverse depends: | BANOVA, bayescount, IsotopeR, pcnetmeta |
| Reverse suggests: | surveillance |
Using this package to call jags from R.
| Version: | 0.04-03 |
| Depends: | R (≥ 2.14.0), rjags (≥ 3-3) |
| Imports: | abind, coda (≥ 0.13), methods, R2WinBUGS, parallel |
| Published: | 2014-06-19 |
| Author: | Yu-Sung Su, Masanao Yajima, |
| Maintainer: | Yu-Sung Su <suyusung at tsinghua.edu.cn> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| SystemRequirements: | jags (>= 3.3.0) |
| Materials: | ChangeLog |
| In views: | Bayesian |
| CRAN checks: | R2jags results |
| Reference manual: | R2jags.pdf |
| Package source: | R2jags_0.04-03.tar.gz |
| Windows binaries: | r-devel: R2jags_0.04-03.zip, r-release: R2jags_0.04-03.zip, r-oldrel: R2jags_0.04-03.zip |
| OS X Snow Leopard binaries: | r-release: R2jags_0.04-03.tgz, r-oldrel: R2jags_0.04-03.tgz |
| OS X Mavericks binaries: | r-release: not available |
| Old sources: | R2jags archive |
| Reverse depends: | BayesMed, CCTpack, IUPS, pcnetmeta |
| Reverse imports: | agRee, classify |
| Reverse suggests: | AICcmodavg, BCEA, BCEs0, iBUGS, mixstock |
| Reverse enhances: | glmmBUGS |
Bayesian mixture models of univariate Gaussian distributions using JAGS
| Version: | 0.7-3 |
| Depends: | R (≥ 2.10) |
| Imports: | rjags (≥ 2.1.0), coda (≥ 0.13) |
| Published: | 2014-03-11 |
| Author: | Bettina Gruen [aut, cre], Martyn Plummer [ctb] |
| Maintainer: | Bettina Gruen <Bettina.Gruen at jku.at> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://ifas.jku.at/gruen/BayesMix |
| NeedsCompilation: | no |
| Materials: | NEWS |
| In views: | Bayesian, Cluster, gR |
| CRAN checks: | bayesmix results |
| Reference manual: | bayesmix.pdf |
| Package source: | bayesmix_0.7-3.tar.gz |
| Windows binaries: | r-devel: bayesmix_0.7-3.zip, r-release: bayesmix_0.7-3.zip, r-oldrel: bayesmix_0.7-3.zip |
| OS X Snow Leopard binaries: | r-release: bayesmix_0.7-3.tgz, r-oldrel: bayesmix_0.7-3.tgz |
| OS X Mavericks binaries: | r-release: not available |
| Old sources: | bayesmix archive |
Interface to the JAGS MCMC library
| Version: | 3-13 |
| Depends: | R (≥ 2.14.0), coda (≥ 0.13) |
| Suggests: | tcltk |
| Published: | 2014-03-06 |
| Author: | Martyn Plummer [aut, cre], Alexey Stukalov [ctb] |
| Maintainer: | Martyn Plummer <plummerm at iarc.fr> |
| License: | GPL (== 2) |
| URL: | http://mcmc-jags.sourceforge.net |
| NeedsCompilation: | yes |
| SystemRequirements: | jags (>= 3.0.0) |
| Materials: | README |
| In views: | Bayesian, Cluster, gR |
| CRAN checks: | rjags results |
| Reference manual: | rjags.pdf |
| Package source: | rjags_3-13.tar.gz |
| Windows binaries: | r-devel: rjags_3-13.zip, r-release: rjags_3-13.zip, r-oldrel: rjags_3-13.zip |
| OS X Snow Leopard binaries: | r-release: rjags_3-13.tgz, r-oldrel: rjags_3-13.tgz |
| OS X Mavericks binaries: | r-release: not available |
| Old sources: | rjags archive |
| Reverse depends: | bamdit, BANOVA, BaySIC, BEST, dcmle, metamisc, prevalence, PurBayes, R2jags, StatMethRank, zoib |
| Reverse imports: | bayesmix, CCTpack, EasyMARK, tdm |
| Reverse suggests: | bcrm, dclone, gemtc, ggmcmc, LEAPFrOG, MethComp, morse, nCal, runjags |
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