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Roughly in order of what you’ll want to check out:

• Installing Theano – How to install Theano.
• Theano at a Glance – What is Theano?
• Tutorial – Learn the basics.
• Library Documentation – Theano’s functionality, module by module.
• Frequently Asked Questions – A set of commonly asked questions.
• Optimizations – Guide to Theano’s graph optimizations.
• Extending Theano – Learn to add a Type, Op, or graph optimization.
• Developer Start Guide – How to contribute code to Theano.
• Theano Design and Implementation Documentation – Primarily of interest to developers of Theano
• Internal Documentation – How to maintain Theano and more...
• Release – How our release should work.
• Acknowledgements – What we took from other projects.
• Related Projects – link to other projects that implement new functionalities on top of Theano
  

You can download the latest PDF documentation, rather than reading it online.

Check out how Theano can be used for Machine Learning: Deep Learning Tutorials.

Theano was featured at SciPy 2010.

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