Dear tryingbing,
There is not in my knowledge any specific command for unbalanced panel data analysis. The commands for panel data are the same but only you must make the appropriate interpretation for your results.
Stata will treat your panel structure as unbalanced one and it will give you the estimation results.
In terms of theoritical analysis, you can read some chapters of Badi Baltagi or William Green or Worldridge to make the exact interpretation of the estimation results.
Hope that help