GO analysis using clusterProfiler5d
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更新于 Mon Jan 04, 2016 15:23 由 R on G. Yu[url=][/url] 通过 R bloggers[url=][/url]












(This article was first published on R on G. Yu, and kindly contributed to R-bloggers)
clusterProfiler supports over-representation test and gene set
enrichment analysis of Gene Ontology. It supports GO annotation from
OrgDb object, GMT file and user’s own data.
support many speciesIn github version of clusterProfiler, enrichGO and gseGO functions
removed the parameter organism and add another parameter OrgDb, so
that any species that have OrgDb object available can be analyzed in
clusterProfiler. Bioconductor have already provide OrgDb for about
20 species, see
http://bioconductor.org/packages/release/BiocViews.html#___OrgDb, and
users can build OrgDb via AnnotationHub.