hi,colleagues of R:
调用deSolve包从别处看到了一段代码,跟我的研究基本拟合,直接拿来改改参数用了,但现在要对一个固定赋值的参数进行分段赋值(根据时间点,前5天原始参数值,后2天参数值变为0),但是一直报错,不知道是我写的不对,还是对Isoda这个函数调用错了,希望大家帮帮忙。Thanks.
原始代码直接贴图了, beta这个值原始是0.7,我需要在时间点6,7,12,14(时间50天,间隔1天)时将beta设定为0,其余时间仍旧为0.7. 将beta赋值的代码改了下,就跑不出来了,怀疑是Isoda函数格式不对,但不知道怎么改。希望朋友们看下
library (deSolve)
seir_model = function (current_timepoint, state_values, parameters)
{
# create state variables (local variables)
S = state_values [1] # susceptibles
E = state_values [2] # exposed
I = state_values [3] # infectious
R = state_values [4] # recovered
with (
as.list (parameters), # variable names within parameters can be used
{
# compute derivatives
dS = (-beta * S * I)
dE = (beta * S * I) - (delta * E)
dI = (delta * E) - (gamma * I)
dR = (gamma * I)
# combine results
results = c (dS, dE, dI, dR)
list (results)
}
)
}
parameter_list = c (beta = beta_value, gamma = gamma_value, delta = delta_value)
V = 5000 # exposed hosts
X = 9999 # susceptible hosts
Y = 1 # infectious hosts
Z = 0 # recovered hosts
N = V + X + Y + Z
initial_values = c (S = X/N, E = V/N, I = Y/N, R = Z/N)
timepoints = seq (0, 50, by=1)
output = lsoda (initial_values, timepoints, seir_model, parameter_list)
head(output,10)