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2393 11
2014-12-02
有一个问题,Dna.CO1.raw是一个变量,是个list,当我输入Dna.CO1.raw[1]的时候,得到下面的data
>Dna.CO1.raw[1]$`gi|507180915|gb|KC132826.1| Trichophya pilicornis voucher ZMUN:10008478 cytochrome oxidase subunit 1 (CO1) gene, partial cds; tRNA-Leu (Leu2) gene, complete sequence; and cytochrome oxidase subunit 2 (CO2) gene, partial cds; mitochondrial`
   [1] "g" "g" "a" "a" "t" "a" "g" "t" "a" "g" "g" "a" "a" "c" "t" "t" "c" "c" "t" "t" "a" "a"
  [23] "g" "t" "t" "t" "a" "t" "t" "a" "a" "t" "t" "c" "g" "a" "g" "c" "a" "g" "a" "a" "t" "t"
  [45] "a" "g" "g" "a" "a" "a" "c" "c" "c" "t" "g" "g" "a" "t" "c" "a" "t" "t" "a" "a" "t" "t"
  [67] "g" "g" "a" "g" "a" "t" "g" "a" "t" "c" "a" "a" "a" "t" "t" "t" "a" "t" "a" "a" "t" "g"
  [89] "t" "a" "a" "t" "c" "g" "t" "c" "a" "c" "t" "g" "c" "a" "c" "a" "t" "g" "c" "t" "t" "t"
[111] "t" "g" "t" "a" "a" "t" "a" "a" "t" "t" "t" "t" "t" "t" "t" "t" "a" "t" "a" "g" "t" "t"
[133] "a" "t" "a" "c" "c" "a" "a" "t" "t" "g" "t" "t" "a" "t" "t" "g" "g" "a" "g" "g" "a" "t"
[155] "t" "t" "g" "g" "a" "a" "a" "t" "t" "g" "a" "t" "t" "a" "g" "t" "c" "c" "c" "c" "t" "t"
[177] "a" "a" "t" "a" "t" "t" "a" "g" "g" "a" "g" "c" "c" "c" "c" "t" "g" "a" "t" "a" "t" "a"
[199] "g" "c" "t" "t" "t" "c" "c" "c" "t" "c" "g" "a" "a" "t" "a" "
。。
。。。
。。


然后我输入Dna.CO1.raw[[1]]时,得到
[1] "g" "g" "a" "a" "t" "a" "g" "t" "a" "g" "g" "a" "a" "c" "t" "t" "c" "c" "t" "t" "a" "a"
  [23] "g" "t" "t" "t" "a" "t" "t" "a" "a" "t" "t" "c" "g" "a" "g" "c" "a" "g" "a" "a" "t" "t"
  [45] "a" "g" "g" "a" "a" "a" "c" "c" "c" "t" "g" "g" "a" "t" "c" "a" "t" "t" "a" "a" "t" "t"
  [67] "g" "g" "a" "g" "a" "t" "g" "a" "t" "c" "a" "a" "a" "t" "t" "t" "a" "t" "a" "a" "t" "g"
  [89] "t" "a" "a" "t" "c" "g" "t" "c" "a" "c" "t" "g" "c" "a" "c" "a" "t" "g" "c" "t" "t" "t"
[111] "t" "g" "t" "a" "a" "t" "a" "a" "t" "t" "t" "t" "t" "t" "t" "t" "a" "t" "a" "g" "t" "t"
[133] "a" "t" "a" "c" "c" "a" "a" "t" "t" "g" "t" "t" "a" "t" "t" "g" "g" "a" "g" "g" "a" "t"
[155] "t" "t" "g" "g" "a" "a" "a" "t" "t" "g" "a" "t" "t" "a" "g" "t" "c" "c" "c" "c" "t" "t"
[177] "a" "a" "t" "a" "t" "t" "a" "g" "g" "a" "g" "c" "c" "c" "c" "t" "g" "a" "t" "a" "t" "a"
[199] "g" "c" "t" "t" "t" "c" "c" "c" "t" "c" "g" "a" "a" "t" "a" "a" "a" "c" "a" "a" "t" "a"
[221] "t" "a" "a" "g" "a" "t" "t" "t" "t" "g" "a" "c" "t" "a" "t" "t" "a" "c" "c" "c" "c" "c"
[243] "t" "t" "c" "t" "t" "t" "a" "a" "c" "t" "t" "t" "a" "t" "t" "a" "t" "t" "a" "a" "t" "a"
[265] "a" "g" "a" "a" "g" "a" "a" "t" "a" "g" "t" "t" "g" "a" "a" "a" "g" "a" "g" "g" "g" "g"
[287] "c" "a" "g" "g" "g" "a" "c" "t" "g" "g" "a" "t" "g" "a" "a" "c" "t" "g" "t" "t" "t" "a"
[309] "t" "c" "c" "t" "c" "c" "c" "c" "t" "c" "t" "c" "t" "t" "c" "t" "a" "a" "t" "a" "t" "t"
[331] "g" "c" "t" "c" "a" "t" "g" "g" "a" "g" "g" "a" "g"



现在我想要直接得到$`gi|507180915|gb|KC132826.1| Trichophya pilicornis voucher ZMUN:10008478 cytochrome oxidase subunit 1 (CO1) gene, partial cds; tRNA-Leu (Leu2) gene, complete sequence; and cytochrome oxidase subunit 2 (CO2) gene, partial cds; mitochondrial`
这串字符串,不知道应该怎么做?????
求教大神!!
谢谢

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2014-12-3 03:36:31
names(Dna.CO1.raw)
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2014-12-3 09:43:13
qoiqpwqr 发表于 2014-12-3 03:36
names(Dna.CO1.raw)
成功了,谢谢,确实大牛 啊
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2014-12-3 10:38:51
对于这样的数据,用Perl语言不是很快吗?
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2014-12-3 10:39:19
搞清楚数据结构,你所需要处理的类型是R语言里面的list类型数据,R所谓的面向对象,也就是它有属性,包括长度,名称等;而这些都有对应的函数来得到你需要的东西。

所以建议里先搞清楚数据结构的一些基本特点:
vector,data.frame,list,matrix等,不然下一次是一个data.frame,你不知道怎么得到维度,你还要继续到论坛上来提问。
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2014-12-3 11:01:48
我很好奇楼主是怎么得到这个变量的。。。直接读入一个DNA序列文本吗?
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